Retrieves the University of Amsterdam (UvA) Bird Tracking System data from the LifeWatch project. Need valid authentication to access the entire data. To get an account, register via the Lifewatch RShiny registration webpage. Without login you can only access data collected at least two years ago.
getUvaBirdData(
startdate,
stopdate,
tagcodes,
by,
usr = NULL,
pwd = NULL,
params = FALSE,
...
)Starting date for the query
Stopping date for the query
List of tag numbers from $tagnr in listUvaTags. Can also use "All HG" "All LBB" or "All MH" (MH only when logged in).
Time grouping for aggregation, one of ("1 day","60 min","10 min","1 min","1 week")
Username to connect to database
Password to connect to database
If TRUE, returns a list with the dataset and the query parameters applied in the server side. IF FALSE returns only the data.
Reserved for internal use.
Dataframe with the specified bird tracking data.
getUvaBirdData("2013-06-10", "2013-06-14", tagcodes = c("719","6013","610"), by = "1 day")
#> - Query mode: Post request to OpenCPU server
#> No encoding supplied: defaulting to UTF-8.
#> - Query parameters:
#> - daterange: c("2013-06-10", "2013-06-14")
#> - type: UVA bird data
#> - tags: c("719", "6013", "610")
#> - binSize: 1 day
#> code time species longitude latitude tracklength
#> 1 LBB:Harry[719] 2013-06-13 00:01:40 LBB 3.2018 51.2750 34830
#> 2 LBB:Harry[719] 2013-06-12 00:22:26 LBB 3.2003 51.2887 35887
#> 3 LBB:Harry[719] 2013-06-11 00:25:45 LBB 3.2250 51.0115 156938
#> 4 LBB:Harry[719] 2013-06-10 00:13:41 LBB 3.1783 51.1361 205916
#> maxdist tracktime counts logcounts
#> 1 12476 23.8306 315 5.7526
#> 2 12232 23.0139 320 5.7683
#> 3 67524 23.3367 704 6.5568
#> 4 67587 23.5953 706 6.5596
getUvaBirdData("2013-06-10", "2013-06-14", tagcodes = "All HG", by = "1 week", params = TRUE)
#> - Query mode: Post request to OpenCPU server
#> No encoding supplied: defaulting to UTF-8.
#> - Query parameters:
#> - daterange: c("2013-06-10", "2013-06-14")
#> - type: UVA bird data
#> - tags: All HG
#> - binSize: 1 week
#> $mdf
#> code time species longitude latitude tracklength
#> 1 HG:Wilma[783] 2013-06-10 00:28:10 HG 2.9759 51.2335 491575
#> 2 HG:Anne[786] 2013-06-10 00:01:10 HG 2.8989 51.2160 469280
#> 3 HG:Luc[799] 2013-06-10 00:59:13 HG 2.9355 51.1385 334647
#> 4 HG:Jurgen[801] 2013-06-10 00:27:42 HG 2.9073 51.2545 770960
#> maxdist tracktime counts logcounts
#> 1 15461 167.4911 2560 7.8478
#> 2 13157 167.4853 3217 8.0762
#> 3 17729 166.0297 1158 7.0544
#> 4 17785 167.0494 2837 7.9505
#>
#> $par
#> $par$daterange
#> [1] "2013-06-10" "2013-06-14"
#>
#> $par$type
#> [1] "UVA bird data"
#>
#> $par$tags
#> [1] "All HG"
#>
#> $par$binSize
#> [1] "1 week"
#>
#>